Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
xylFABC transporter, substrate binding protein (xylose). (346 aa)    
Predicted Functional Partners:
xylG
ABC transporter, nucleotide binding/ATPase protein (xylose).
 
 
 0.991
xylH
ABC transporter, membrane spanning protein (xylose); Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.991
Atu3577
Transcriptional regulator.
 
     0.804
gguB
ABC transporter, membrane spanning protein (sugar); Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.803
xylA
Xylose isomerase; Belongs to the xylose isomerase family.
 
  
 0.722
gguA
ABC transporter, nucleotide binding/ATPase protein (sugar).
 
  
 0.594
gguC
Conserved hypothetical protein.
     
 0.506
rbsB-3
ABC transporter, substrate binding protein (ribose).
  
  
 0.492
Atu3487
ABC transporter, substrate binding protein (sugar).
  
  
 0.490
pfs
5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase.
      
 0.461
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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