STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu3590Transporter. (305 aa)    
Predicted Functional Partners:
Atu0376
Conserved hypothetical protein.
  
     0.589
Atu3591
Short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
    0.577
Atu3593
Conserved hypothetical protein; Belongs to the Cob(I)alamin adenosyltransferase family.
       0.552
Atu8190
Conserved hypothetical protein.
       0.552
Atu4693
Outer membrane protein; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.
  
   
 0.530
Atu1773
Conserved hypothetical protein.
  
     0.514
Atu1021
Outer membrane protein; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.
  
   
 0.509
Atu1020
Outer membrane protein; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.
  
   
 0.500
chaA
Ca2+/H+ antiporter.
  
    0.459
Atu3594
Conserved hypothetical protein.
  
  
 0.459
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.