Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Atu3602Conserved hypothetical protein. (902 aa)    
Predicted Functional Partners:
Atu2254
Conserved hypothetical protein.
  
   
 0.780
Atu8175
Putative transmembrane protein, RNA-binding region RNP-1 (RNA recognition motif).
  
    0.779
Atu2257
Conserved hypothetical protein.
  
     0.774
Atu1373
Conserved hypothetical protein.
  
     0.763
Atu1348
Conserved hypothetical protein.
 
 
   0.751
Atu3757
Conserved hypothetical protein.
 
   
 0.750
Atu0570
Chemotaxis protein.
  
 
 
 0.745
rpsL
30S ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy.
  
 
 0.723
Atu1709
Glycosyl hydrolase.
 
  
 0.711
Atu0635
Hypothetical protein.
 
     0.703
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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