STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu3620Conserved hypothetical protein. (341 aa)    
Predicted Functional Partners:
cobT-2
Cobyrinic acid synthase.
       0.886
Atu3523
Polysaccharide biosynthesis associated protein.
  
     0.628
cobS-2
Cobalamin biosynthesis protein.
       0.618
Atu1235
Conserved hypothetical protein.
  
     0.603
Atu1240
Conserved hypothetical protein.
  
     0.576
Atu1349
Hypothetical protein.
  
     0.553
dnaJ-4
Molecular chaperone, DnaJ family.
       0.529
Atu8095
Conserved hypothetical protein.
  
     0.504
Atu8144
Conserved hypothetical protein.
  
     0.481
Atu8118
Putative universal stress protein.
  
     0.476
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.