Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Atu3631Conserved hypothetical protein. (379 aa)    
Predicted Functional Partners:
Atu3632
Conserved hypothetical protein; Belongs to the sulfur carrier protein TusA family.
       0.886
Atu1745
Conserved hypothetical protein.
  
     0.736
Atu0376
Conserved hypothetical protein.
  
    0.702
ialB
Invasion associated locus B.
  
     0.654
Atu1573
Hypothetical protein.
  
     0.654
Atu3763
Conserved hypothetical protein.
  
    0.614
omp
Outer membrane protein.
  
     0.603
Atu3761
Conserved hypothetical protein.
  
     0.590
ropB
Outer membrane protein.
  
     0.561
Atu1773
Conserved hypothetical protein.
  
     0.554
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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