STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu3663Conserved hypothetical protein. (140 aa)    
Predicted Functional Partners:
Atu0238
Oxidoreductase.
 
     0.626
nifS-2
Cysteine desulfurase.
  
  
 0.570
ephA
Epoxide hydrolase.
       0.510
Atu3072
Peptide synthetase; Belongs to the ATP-dependent AMP-binding enzyme family.
     
 0.498
fecR
Two component sensor kinase.
      
 0.464
Atu3692
Sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
      
 0.460
Atu3669
Siderophore biosynthesis protein.
      
 0.457
Atu3684
Siderophore biosynthesis protein.
      
 0.457
fecE-3
ABC transporter, nucleotide binding/ATPase protein (iron (III) dicitrate).
      
 0.457
Atu1623
Pyridine nucleotide-disulphide oxidoreductase.
 
     0.438
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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