STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu3677Polyketide synthase, siderophore biosynthesis protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (491 aa)    
Predicted Functional Partners:
Atu3675
Peptide synthetase, siderophore biosynthesis protein.
   
 0.993
Atu3681
Polyketide synthetase, siderophore biosynthesis protein.
   
 0.981
Atu3672
Polyketide synthase, siderophore biosynthesis protein.
   
 0.976
Atu3670
Siderophore biosynthesis protein.
   
 0.964
Atu3683
Peptide synthetase, siderophore biosynthesis protein.
   
 0.964
Atu3671
Siderophore biosynthesis protein.
     0.946
Atu3684
Siderophore biosynthesis protein.
   
 0.908
Atu3682
Non-ribosomal peptide synthetase, siderophore biosynthesis protein.
   
 0.904
Atu3673
Siderophore biosynthesis protein.
  
 0.883
hemB
Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family.
 
  
 0.838
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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