Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Atu3679Putative siderophore biosynthesis protein. (172 aa)    
Predicted Functional Partners:
Atu3680
Putative siderophore biosynthesis protein.
       0.782
Atu3678
Putative siderophore biosynthesis protein.
       0.772
Atu3675
Peptide synthetase, siderophore biosynthesis protein.
       0.739
Atu3676
Putative siderophore biosynthesis protein.
       0.721
Atu3677
Polyketide synthase, siderophore biosynthesis protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
       0.721
Atu3681
Polyketide synthetase, siderophore biosynthesis protein.
       0.648
Atu3682
Non-ribosomal peptide synthetase, siderophore biosynthesis protein.
       0.648
Atu3683
Peptide synthetase, siderophore biosynthesis protein.
       0.631
Atu3684
Siderophore biosynthesis protein.
       0.631
Atu3685
Thioesterase, putative siderophore biosynthesis protein.
       0.630
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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