STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu3681Polyketide synthetase, siderophore biosynthesis protein. (1477 aa)    
Predicted Functional Partners:
Atu3675
Peptide synthetase, siderophore biosynthesis protein.
 
 0.998
Atu3677
Polyketide synthase, siderophore biosynthesis protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
   
 0.982
Atu3682
Non-ribosomal peptide synthetase, siderophore biosynthesis protein.
 
0.975
Atu3683
Peptide synthetase, siderophore biosynthesis protein.
 
0.971
Atu3670
Siderophore biosynthesis protein.
 
0.966
Atu3673
Siderophore biosynthesis protein.
 0.966
Atu3685
Thioesterase, putative siderophore biosynthesis protein.
  
 0.955
Atu3684
Siderophore biosynthesis protein.
 
0.942
qor
Quinone oxidoreductase.
 
 
 0.913
Atu3671
Siderophore biosynthesis protein.
     0.906
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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