Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Atu3687TonB-dependent receptor. (812 aa)    
Predicted Functional Partners:
fecR
Two component sensor kinase.
 
  
 0.798
tonB
tonB protein.
  
 
 0.778
tolA
Conserved hypothetical protein.
  
 
 0.778
Atu3276
Conserved hypothetical protein.
  
 
 
 0.747
Atu3386
Two component sensor kinase.
 
  
 0.707
Atu3686
Putative siderophore biosynthesis protein.
 
  
 0.688
Atu3692
Sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
 
  
 0.680
fecC
ABC transporter, membrane spanning protein (iron(III) dicitrate); Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
  
 0.676
Atu0409
Ferrichrome iron receptor.
 
  
 0.663
fecE-3
ABC transporter, nucleotide binding/ATPase protein (iron (III) dicitrate).
  
  
 0.650
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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