STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lonDATP-dependent protease LA 2. (215 aa)    
Predicted Functional Partners:
Atu3696
Conserved hypothetical protein; Belongs to the UPF0434 family.
       0.886
Atu3698
Putative thioredoxin.
 
  
 0.750
Atu3695
Conserved hypothetical protein.
 
     0.636
Atu3699
Conserved hypothetical protein.
       0.558
pbpC-2
Penicillin binding protein.
       0.544
hspC
Small heat shock protein; Belongs to the small heat shock protein (HSP20) family.
  
    0.482
hspL
Small heat shock protein; Belongs to the small heat shock protein (HSP20) family.
  
    0.454
ccrM
Cell cycle regulated site-specific DNA-methyltransferase protein; Belongs to the N(4)/N(6)-methyltransferase family.
  
   
 0.429
moeB
Molybdopterin biosynthesis protein.
    
 0.401
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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