STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu3728Conserved hypothetical protein. (167 aa)    
Predicted Functional Partners:
Atu3727
Conserved hypothetical protein.
       0.579
Atu4036
DNA topoisomerase.
 
     0.534
Atu4724
Conserved hypothetical protein; Belongs to the UPF0337 (CsbD) family.
 
    0.532
Atu2165
Bacteriophytochrome protein.
  
     0.506
pfpI
Proteinase.
 
    0.494
Atu2402
Urease accessory protein.
   
    0.482
chaA
Ca2+/H+ antiporter.
  
    0.425
Atu8096
Conserved hypothetical protein; Belongs to the UPF0337 (CsbD) family.
  
    0.425
Atu0782
Conserved hypothetical protein; Belongs to the UPF0337 (CsbD) family.
  
    0.423
Atu0902
Conserved hypothetical protein.
 
     0.422
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.