STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu3728Conserved hypothetical protein. (167 aa)    
Predicted Functional Partners:
Atu4724
Conserved hypothetical protein; Belongs to the UPF0337 (CsbD) family.
 
    0.692
Atu8096
Conserved hypothetical protein; Belongs to the UPF0337 (CsbD) family.
  
    0.621
Atu0782
Conserved hypothetical protein; Belongs to the UPF0337 (CsbD) family.
  
    0.619
Atu2431
Conserved hypothetical protein.
   
    0.618
Atu1999
Conserved hypothetical protein.
  
    0.591
Atu4036
DNA topoisomerase.
 
     0.534
Atu3727
Conserved hypothetical protein.
       0.529
Atu2165
Bacteriophytochrome protein.
  
     0.506
pfpI
Proteinase.
 
    0.486
Atu2402
Urease accessory protein.
   
  
 0.461
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.