Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Atu3742Conserved hypothetical protein. (171 aa)    
Predicted Functional Partners:
ctpB
Components of type IV pilus, prepilin peptidase.
  
     0.760
Atu0226
PilQ.
  
     0.756
ctpE
Components of type IV pilus.
  
     0.753
ctpF
Components of type IV pilus.
  
     0.752
Atu8163
Conserved hypothetical protein.
  
     0.751
Atu1742
Conserved hypothetical protein.
  
     0.746
Atu0215
Conserved hypothetical protein.
  
     0.745
Atu0148
Atu0148-1 mutant of a conserved hypothetical protein.
  
     0.741
Atu1570
Hypothetical protein.
  
     0.727
Atu0147
Conserved hypothetical protein.
  
     0.722
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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