Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Atu2606 | hutC-2 | Atu2606 | Atu3799 | Transcriptional regulator, GntR family. | Transcriptional regulator, GntR family. | 0.681 |
Atu2606 | nagA | Atu2606 | Atu2608 | Transcriptional regulator, GntR family. | N-acetylglucosamine-6-phosphate deacetylase. | 0.913 |
Atu2606 | pobR | Atu2606 | Atu4545 | Transcriptional regulator, GntR family. | Transcriptional regulator, AraC family. | 0.458 |
Atu3929 | hutC-2 | Atu3929 | Atu3799 | Conserved hypothetical protein. | Transcriptional regulator, GntR family. | 0.695 |
Atu3929 | hutH | Atu3929 | Atu3803 | Conserved hypothetical protein. | Histidine ammonia-lyase. | 0.436 |
Atu3929 | hutH-2 | Atu3929 | Atu3933 | Conserved hypothetical protein. | Histidine ammonia-lyase; Belongs to the PAL/histidase family. | 0.602 |
Atu3929 | hutI | Atu3929 | Atu3934 | Conserved hypothetical protein. | Imidazolone-5-propionate hydrolase. | 0.631 |
Atu3929 | hutU | Atu3929 | Atu3931 | Conserved hypothetical protein. | Urocanase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate. | 0.727 |
hutC-2 | Atu2606 | Atu3799 | Atu2606 | Transcriptional regulator, GntR family. | Transcriptional regulator, GntR family. | 0.681 |
hutC-2 | Atu3929 | Atu3799 | Atu3929 | Transcriptional regulator, GntR family. | Conserved hypothetical protein. | 0.695 |
hutC-2 | hutH | Atu3799 | Atu3803 | Transcriptional regulator, GntR family. | Histidine ammonia-lyase. | 0.728 |
hutC-2 | hutH-2 | Atu3799 | Atu3933 | Transcriptional regulator, GntR family. | Histidine ammonia-lyase; Belongs to the PAL/histidase family. | 0.635 |
hutC-2 | hutI | Atu3799 | Atu3934 | Transcriptional regulator, GntR family. | Imidazolone-5-propionate hydrolase. | 0.732 |
hutC-2 | hutU | Atu3799 | Atu3931 | Transcriptional regulator, GntR family. | Urocanase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate. | 0.692 |
hutC-2 | nagA | Atu3799 | Atu2608 | Transcriptional regulator, GntR family. | N-acetylglucosamine-6-phosphate deacetylase. | 0.479 |
hutC-2 | pobR | Atu3799 | Atu4545 | Transcriptional regulator, GntR family. | Transcriptional regulator, AraC family. | 0.458 |
hutC-2 | proX | Atu3799 | Atu3800 | Transcriptional regulator, GntR family. | ABC transporter, substrate binding protein (proline/glycine betaine). | 0.459 |
hutC-2 | tetR | Atu3799 | Atu4205 | Transcriptional regulator, GntR family. | Transcriptional regulator, TetR family. | 0.508 |
hutH | Atu3929 | Atu3803 | Atu3929 | Histidine ammonia-lyase. | Conserved hypothetical protein. | 0.436 |
hutH | hutC-2 | Atu3803 | Atu3799 | Histidine ammonia-lyase. | Transcriptional regulator, GntR family. | 0.728 |
page 1 of 3