STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hutHHistidine ammonia-lyase. (500 aa)    
Predicted Functional Partners:
hutU
Urocanase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.
 
 0.995
hutI
Imidazolone-5-propionate hydrolase.
 
  
 0.956
hutH-2
Histidine ammonia-lyase; Belongs to the PAL/histidase family.
 
  
 
0.922
hisD
Histidinol dehydrogenase; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine.
    
 0.920
proW
ABC transporter, membrane spanning protein (proline/glycine betaine).
  
  
 0.822
proV
ABC transporter, nucleotide binding/ATPase protein (proline/glycine betaine).
  
    0.808
hutC-2
Transcriptional regulator, GntR family.
 
  
 0.728
proX
ABC transporter, substrate binding protein (proline/glycine betaine).
 
  
 0.645
Atu3935
Hydrolase.
 
  
 0.607
Atu2596
beta-N-acetylhexosaminidase.
   
    0.587
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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