STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
int-2Phage-related integrase; Belongs to the 'phage' integrase family. (396 aa)    
Predicted Functional Partners:
int
Phage-related integrase; Belongs to the 'phage' integrase family.
     
 0.518
Atu3849
Resolvase.
  
  
 0.494
Atu0436
Conserved hypothetical protein.
   
  
 0.486
Atu0471
Hypothetical protein.
      
 0.447
Atu3858
Hypothetical protein.
      
 0.447
Atu1183
DNA-directed RNA polymerase.
      
 0.445
Atu3636
Hypothetical protein.
      
 0.445
ditI
Short-chain dehydrogenase.
      
 0.445
Atu3832
Hypothetical protein.
       0.440
Atu3830
MFS permease.
     
 0.412
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.