STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu3849Resolvase. (210 aa)    
Predicted Functional Partners:
Atu8128
Putative bacteriophage P2 tail protein.
   
  
 0.798
Atu3850
Hypothetical protein.
       0.773
Atu0460
Conserved hypothetical protein.
   
    0.660
traA
Conjugation protein.
 
   
 0.518
int-2
Phage-related integrase; Belongs to the 'phage' integrase family.
  
  
 0.494
ccdA
Cytochrome c-type biogenesis protein.
   
    0.487
int
Phage-related integrase; Belongs to the 'phage' integrase family.
  
  
 0.476
Atu3848
Hypothetical protein.
       0.473
telA
Protelomerase.
      
 0.457
Atu0454
Hypothetical protein.
   
  
 0.454
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.