Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Atu3860Conserved hypothetical protein. (747 aa)    
Predicted Functional Partners:
exoP
Exopolysaccharide production protein.
 
   
 0.836
Atu1240
Conserved hypothetical protein.
 
   
 0.797
Atu1235
Conserved hypothetical protein.
 
   
 0.795
Atu3523
Polysaccharide biosynthesis associated protein.
 
   
 0.778
Atu1236
Polysaccharide biosynthesis glycosyltransferase.
 
   
 0.750
Atu1237
Glycosyl transferase.
 
  
 0.740
Atu3777
Conserved hypothetical protein.
 
     0.714
Atu8163
Conserved hypothetical protein.
  
     0.693
celD
Cellulose biosynthesis protein.
 
   
 0.666
Atu3072
Peptide synthetase; Belongs to the ATP-dependent AMP-binding enzyme family.
       0.648
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.