Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Atu3865Conserved hypothetical protein. (1108 aa)    
Predicted Functional Partners:
Atu3866
Conserved hypothetical protein.
 
  
 0.988
Atu3867
Conserved hypothetical protein.
 
    
0.919
Atu0783
Conserved hypothetical protein.
 
     0.784
Atu2338
Conserved hypothetical protein.
 
    0.783
Atu2339
Conserved hypothetical protein.
 
  
 0.777
exsE
ABC transporter, nucleotide binding/ATPase protein.
 
     0.541
Atu3864
Hypothetical protein.
       0.484
Atu3868
Hypothetical protein.
       0.462
dnaK
DNAK Protein; Acts as a chaperone; Belongs to the heat shock protein 70 family.
     
 0.427
Atu0988
Molecular chaperone, Hsp70 family.
     
 0.427
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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