STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lyxKL-xylulose kinase; Belongs to the FGGY kinase family. (492 aa)    
Predicted Functional Partners:
Atu3875
Aldolase.
  
 0.917
Atu3484
Conserved hypothetical protein.
    
 0.910
glpD-2
Glycerol-3-phosphate dehydrogenase.
 
  
 0.906
Atu3878
Transcriptional regulator.
 
  
 0.747
Atu3881
ABC transporter, substrate binding protein (sugar).
 
  
 0.705
Atu3877
Aldo-keto reductase.
 
    0.610
rhaM
Conserved hypothetical protein; Involved in the anomeric conversion of L-rhamnose.
  
  
 0.573
Atu2812
Conserved hypothetical protein.
  
  
 0.570
Atu3814
Conserved hypothetical protein.
  
  
 0.570
Atu3879
ABC transporter, membrane spanning protein (sugar); Belongs to the binding-protein-dependent transport system permease family.
 
    0.502
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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