STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Atu3884Conserved hypothetical protein. (294 aa)    
Predicted Functional Partners:
hutI
Imidazolone-5-propionate hydrolase.
  
  
 0.748
Atu3883
Chemotaxis response regulator.
       0.675
Atu0536
Conserved hypothetical protein; Belongs to the UPF0262 family.
  
     0.617
Atu3885
Inositol monophosphatase family protein.
 
     0.606
Atu2051
Conserved hypothetical protein.
  
     0.592
mgpS
ATP-dependent helicase.
  
     0.575
Atu3509
Conserved hypothetical protein.
 
     0.553
Atu0088
Conserved hypothetical protein.
  
     0.548
hutU
Urocanase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.
  
  
 0.502
cobT-2
Cobyrinic acid synthase.
  
     0.484
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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