STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nrtBABC transporter, membrane spanning protein (nitrate). (297 aa)    
Predicted Functional Partners:
nrtC
ABC transporter, nucleotide binding/ATPase protein (nitrate).
 
 
 0.996
ntrA
ABC transporter, substrate binding protein (nitrate).
 
 
 0.993
nasA
Nitrate reductase large subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
 
  
 0.973
napA
Periplasmic nitrate reductase large subunit; Catalytic subunit of the periplasmic nitrate reductase complex NapAB. Receives electrons from NapB and catalyzes the reduction of nitrate to nitrite.
    
  0.900
napB
Periplasmic nitrate reductase small subunit; Electron transfer subunit of the periplasmic nitrate reductase complex NapAB; Belongs to the NapB family.
     
  0.900
nrtC-2
ABC transporter, nucleotide binding/ATPase protein (nitrate).
 
  
 0.873
Atu0159
ABC transporter, nucleotide binding/ATPase protein.
 
  
 0.846
nirB
Nitrite reductase large subunit; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
 
   
 0.835
nirD
Nitrite reductase small subunit.
 
     0.827
Atu4598
ABC transporter, nucleotide binding/ATPase protein.
 
  
 0.817
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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