Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
repBReplication protein B; Belongs to the ParB family. (337 aa)    
Predicted Functional Partners:
repA
Replication protein A.
 
 
 0.993
repC
Replication protein C.
 
   
 0.954
parA-2
Chromosome partitioning protein.
 
 
 0.731
Atu1720
Conserved hypothetical protein.
  
 
 
 0.686
parA
Chromosome partitioning protein.
  
 
 0.686
guaA-2
GMP synthase; Catalyzes the synthesis of GMP from XMP.
     
 0.644
gidB
Glucose inhibited division protein; Specifically methylates the N7 position of guanine in position 527 of 16S rRNA.
  
  
 0.644
smc
Chromosome segregation protein; Required for chromosome condensation and partitioning. Belongs to the SMC family.
  
 
 0.594
dnaA
Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids (By similarity).
  
  
 0.572
Atu3932
Conserved hypothetical protein.
  
  
 0.530
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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