Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
Atu3929Conserved hypothetical protein. (190 aa)    
Predicted Functional Partners:
Atu3932
Conserved hypothetical protein.
 
    0.903
hutU
Urocanase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.
 
  
 0.882
hutI
Imidazolone-5-propionate hydrolase.
 
  
 0.836
hutH-2
Histidine ammonia-lyase; Belongs to the PAL/histidase family.
 
  
 0.831
Atu3936
Transcriptional regulator, GntR family.
 
  
 0.804
Atu3935
Hydrolase.
 
    0.775
hutC
Transcriptional regulator, GntR family.
 
  
 0.732
hutC-2
Transcriptional regulator, GntR family.
 
  
 0.729
Atu3930
Conserved hypothetical protein.
       0.656
hutH
Histidine ammonia-lyase.
 
  
 0.505
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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