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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu3929Conserved hypothetical protein. (190 aa)    
Predicted Functional Partners:
Atu3936
Transcriptional regulator, GntR family.
 
  
 0.780
Atu3932
Conserved hypothetical protein.
 
    0.765
hutU
Urocanase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.
 
  
 0.727
hutC
Transcriptional regulator, GntR family.
 
  
 0.699
Atu3935
Hydrolase.
 
    0.696
hutC-2
Transcriptional regulator, GntR family.
 
  
 0.695
Atu3930
Conserved hypothetical protein.
       0.653
hutI
Imidazolone-5-propionate hydrolase.
 
   
 0.631
hutH-2
Histidine ammonia-lyase; Belongs to the PAL/histidase family.
 
  
 0.602
hutH
Histidine ammonia-lyase.
 
  
 0.436
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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