STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu3935Hydrolase. (448 aa)    
Predicted Functional Partners:
hutI
Imidazolone-5-propionate hydrolase.
 
 
 0.989
Atu3932
Conserved hypothetical protein.
 
 
 0.986
Atu3936
Transcriptional regulator, GntR family.
 
  
 0.918
hutH-2
Histidine ammonia-lyase; Belongs to the PAL/histidase family.
 
  
 0.887
hutU
Urocanase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.
 
  
 0.864
hutC
Transcriptional regulator, GntR family.
 
  
 0.717
Atu3929
Conserved hypothetical protein.
 
    0.696
hutH
Histidine ammonia-lyase.
 
  
 0.607
hutC-2
Transcriptional regulator, GntR family.
 
  
 0.436
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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