STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Atu3952Oxidoreductase. (442 aa)    
Predicted Functional Partners:
hadL
Haloalkanoic acid dehalogenase.
  
  
  0.787
soxA
Sarcosine oxidase alpha subunit.
  
 
 0.732
Atu3951
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
     
 0.717
hadL-2
2-haloalkanoic acid dehalogenase.
  
  
  0.713
soxA-2
Sarcosine oxidase alpha subunit.
  
 
 0.709
soxA-3
Sarcosine oxidase alpha subunit.
  
 
 0.708
Atu3406
Conserved hypothetical protein.
 
     0.688
Atu3409
ABC transporter, substrate binding protein (oligopeptide).
  
     0.679
Atu3397
Conserved hypothetical protein.
  
     0.671
ordL-5
Oxidoreductase.
  
   
 0.653
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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