Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Atu3954ABC transporter, membrane spanning protein. (283 aa)    
Predicted Functional Partners:
Atu3956
ABC transporter, nucleotide binding/ATPase protein.
 
 0.994
Atu3957
ABC transporter, substrate binding protein (glycine-betaine).
 
 0.983
Atu0893
ABC transporter, nucleotide binding/ATPase protein.
 
 0.979
Atu2279
ABC transporter, nucleotide binding/ATPase protein (proline/glycine betaine).
 
 0.979
proV
ABC transporter, nucleotide binding/ATPase protein (proline/glycine betaine).
 
 0.979
Atu4044
ABC transporter, nucleotide binding/ATPase protein (glycine betaine).
 
 0.979
Atu4647
Conserved hypothetical protein.
 
 0.926
Atu3955
ABC transporter, membrane spanning protein.
 
  
 
0.902
proX
ABC transporter, substrate binding protein (proline/glycine betaine).
 
 0.892
Atu2060
ABC transporter, substrate binding protein (glycine betaine).
 
 0.862
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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