Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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textmining
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experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Atu3958Oxidoreductase. (448 aa)    
Predicted Functional Partners:
dapA-4
Dihydrodipicolinate synthase; Belongs to the DapA family.
 
   
 0.955
Atu3961
Transcriptional regulator, GntR family.
 
  
 0.923
dhaL
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
  
 0.911
soxA
Sarcosine oxidase alpha subunit.
  
 
 0.707
soxA-2
Sarcosine oxidase alpha subunit.
  
 
 0.707
soxA-3
Sarcosine oxidase alpha subunit.
  
 
 0.707
Atu3953
Conserved hypothetical protein; Belongs to the proline racemase family.
     
 0.660
Atu3957
ABC transporter, substrate binding protein (glycine-betaine).
       0.615
proC-2
Pyrroline-5-carboxylate reductase.
  
  
 0.564
Atu4240
Alkanal monooxygenase alpha chain.
  
     0.537
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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