STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu3961Transcriptional regulator, GntR family. (249 aa)    
Predicted Functional Partners:
Atu3958
Oxidoreductase.
 
  
 0.923
dapA-4
Dihydrodipicolinate synthase; Belongs to the DapA family.
 
   
 0.905
dhaL
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
     
 0.872
Atu4232
Transcriptional regulator, GntR family.
  
     0.769
Atu4118
Transcriptional regulator, GntR family.
  
     0.768
Atu1387
Transcriptional regulator, GntR family.
  
     0.767
Atu3020
Transcriptional regulator, GntR family.
  
     0.763
Atu1419
Transcriptional regulator, GntR family.
  
     0.762
Atu3908
Transcriptional regulator, GntR family.
  
     0.755
Atu0791
Transcriptional regulator, GntR family.
  
     0.750
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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