STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
copBCopper tolerance protein. (492 aa)    
Predicted Functional Partners:
copA
Multicopper oxidase.
 
   
 0.951
copC
Copper tolerance protein.
 
     0.920
Atu1817
Conserved hypothetical protein.
  
 
 0.611
Atu1087
Secretion protein.
  
 
 0.570
prsE2
HlyD family secretion protein.
  
 
 0.570
Atu3057
Hypothetical protein.
  
 
 0.570
Atu3323
Secretion protein, HlyD family.
  
 
 0.570
prsE2-2
Secretion protein, HlyD family.
  
 
 0.570
rspE
ABC transporter, membrane spanning protein (bacteriocin).
  
 
 0.570
emrA
Multidrug resistance efflux pump.
  
 
 0.570
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.