Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Atu3995Transcriptional regulator, AraC family. (262 aa)    
Predicted Functional Partners:
Atu3994
Conserved hypothetical protein.
       0.571
Atu3432
Desulfurizing enzyme.
  
     0.518
Atu1213
Hypothetical protein.
  
     0.505
Atu3448
Putative dibenzothiophene desulfurization enzyme B.
  
     0.459
Atu4146
Conserved hypothetical protein.
  
     0.451
Atu0597
Conserved hypothetical protein.
  
     0.450
Atu0264
Transcriptional regulator, AraC family.
  
   0.447
Atu3996
Conserved hypothetical protein.
       0.443
Atu3546
Hypothetical protein.
  
     0.400
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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