STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
idhAMyo-inositol 2-dehydrogenase. (330 aa)    
Predicted Functional Partners:
iolE
Conserved hypothetical protein.
 
 
 0.982
Atu4555
Conserved hypothetical protein.
 
 
  0.936
iolG
Myo-inositol 2-dehydrogenase; Involved in the oxidation of myo-inositol (MI) to 2-keto-myo- inositol (2KMI or 2-inosose).
  
  
 
0.927
Atu0694
Inositol monophosphatase family protein.
     
 0.905
suhB
Extragenic suppressor protein SuhB; Belongs to the inositol monophosphatase superfamily.
     
 0.901
Atu4573
Inositol monophosphatase family protein.
     
 0.901
Atu4787
Inositol monophosphatase family protein.
     
 0.901
iolD
Acetolactate synthase; Belongs to the TPP enzyme family.
 
  
 0.883
iolB
Conserved hypothetical protein.
 
  
 0.880
iolC
Myo-inositol catabolism IolC protein.
 
  
 0.829
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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