STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fhuAHydroxamate-type ferrisiderophore receptor. (710 aa)    
Predicted Functional Partners:
fhuD
ABC transporter, substrate binding protein (ferrichrome).
 
  
 0.869
fhuB
ABC transporter, membrane spanning protein (ferrichrome); Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
  
 0.842
fhuC
ABC transporter, nucleotide binding/ATPase protein (ferrichrome).
 
  
 0.777
Atu3675
Peptide synthetase, siderophore biosynthesis protein.
 
  
 0.670
fecR
Two component sensor kinase.
 
  
 0.651
Atu3386
Two component sensor kinase.
 
  
 0.647
Atu2287
Outer membrane heme receptor.
 
  
 0.609
bfrA
Exogenous ferric siderophore receptor.
 
  
0.548
Atu3683
Peptide synthetase, siderophore biosynthesis protein.
   
  
 0.543
Atu4021
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
       0.511
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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