STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu4029Gluconolactonase precursor. (306 aa)    
Predicted Functional Partners:
gcd-2
Glucose dehydrogenase.
  
  
 0.929
gntK
Gluconokinase.
    
 0.909
Atu4031
ABC transporter, membrane spanning protein (sugar); Belongs to the binding-protein-dependent transport system permease family.
 
     0.810
Atu4030
ABC transporter, membrane spanning protein (sugar); Belongs to the binding-protein-dependent transport system permease family.
 
     0.799
Atu4032
ABC transporter, nucleotide binding/ATPase protein (sugar).
 
     0.785
Atu4033
ABC transporter, substrate binding protein (sugar).
 
     0.716
Atu2741
Conserved hypothetical protein.
 
   
 0.665
Atu2738
Nucleoside-diphosphate-sugar epimerase.
  
     0.616
phnC
ABC transporter, nucleotide binding/ATPase protein (phosphonate); Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphonates importer (TC 3.A.1.9.1) family.
      
 0.577
gcd
Glucose dehydrogenase.
    
 0.577
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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