STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Atu4045ABC transporter, membrane spanning protein (glycine betaine). (295 aa)    
Predicted Functional Partners:
Atu4044
ABC transporter, nucleotide binding/ATPase protein (glycine betaine).
 
 0.998
Atu0893
ABC transporter, nucleotide binding/ATPase protein.
 
 0.979
Atu2279
ABC transporter, nucleotide binding/ATPase protein (proline/glycine betaine).
 
 0.979
proV
ABC transporter, nucleotide binding/ATPase protein (proline/glycine betaine).
 
 0.979
Atu3956
ABC transporter, nucleotide binding/ATPase protein.
 
 0.979
Atu3957
ABC transporter, substrate binding protein (glycine-betaine).
 
 0.972
Atu4046
ABC transporter, substrate binding protein (glycine betaine).
 
 0.964
proX
ABC transporter, substrate binding protein (proline/glycine betaine).
 
 0.946
Atu0895
ABC transporter, substrate binding protein.
 
 0.921
Atu0199
ABC transporter, substrate binding protein (proline/glycine/betaine).
 
 
 
 0.915
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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