STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu4046ABC transporter, substrate binding protein (glycine betaine). (332 aa)    
Predicted Functional Partners:
Atu4045
ABC transporter, membrane spanning protein (glycine betaine).
 
 0.964
proX
ABC transporter, substrate binding protein (proline/glycine betaine).
  
  
 
0.922
Atu4044
ABC transporter, nucleotide binding/ATPase protein (glycine betaine).
 
 
 0.915
Atu0894
ABC transporter, membrane spanning protein.
 
 0.910
Atu0895
ABC transporter, substrate binding protein.
  
  
 
0.902
Atu2060
ABC transporter, substrate binding protein (glycine betaine).
     
 0.901
Atu2281
ABC transporter, substrate binding protein (proline/glycine betaine).
     
 0.901
Atu3957
ABC transporter, substrate binding protein (glycine-betaine).
     
 0.901
Atu4647
Conserved hypothetical protein.
     
 0.901
proW
ABC transporter, membrane spanning protein (proline/glycine betaine).
 
 0.870
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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