STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
exoKEndo-1,3-1,4-beta-glycanase. (263 aa)    
Predicted Functional Partners:
exoL
Succinoglycan biosynthesis protein.
 
   
 0.978
exoH
Succinoglycan biosynthesis protein.
 
   
 0.956
exoM-2
UDP-hexose transferase.
 
   
 0.930
exoO
Succinoglycan biosynthesis glycosyltransferase.
 
   
 0.897
exoA
Succinoglycan biosynthesis protein.
 
     0.891
exoQ-3
Exopolysaccharide production protein.
 
   
 0.874
exoF
Exopolysaccharide production protein.
 
   
 0.854
exoU-2
Succinoglycan biosynthesis glycosyltransferase.
 
   
 0.848
exoT
Succinoglycan biosynthesis transport protein.
 
   
 0.819
exoQ
Exopolysaccharide production protein.
 
   
 0.787
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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