Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
nodNNodulation protein N. (162 aa)    
Predicted Functional Partners:
fadB-2
enoyl-CoA hydratase.
 
 0.854
Atu4071
Conserved hypothetical protein.
       0.834
glgX
Glycogen debranching enzyme; Belongs to the glycosyl hydrolase 13 family.
       0.787
fadB
Enoyl CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
 
 0.731
tesB
acyl-CoA thioesterase II.
  
 
 0.711
Atu3072
Peptide synthetase; Belongs to the ATP-dependent AMP-binding enzyme family.
     
 0.686
Atu0415
Conserved hypothetical protein.
 
    0.608
Atu4870
NADP-dependent quinone oxidoreductase.
 
 
 0.592
acd-2
acyl-CoA dehydrogenase.
 
 0.584
acd
acyl-CoA dehydrogenase.
 
 0.537
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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