STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu4100Conserved hypothetical protein. (162 aa)    
Predicted Functional Partners:
Atu4805
Two component sensor kinase/response regulator hybrid.
  
 
 0.827
Atu4047
Two component sensor kinase/response regulator hybrid.
  
 
 0.788
Atu2165
Bacteriophytochrome protein.
 
 
 0.775
Atu0527
Two component sensor kinase/response regulator hybrid.
  
 
 0.753
Atu1362
Two component sensor kinase.
  
 
 0.668
Atu2332
Two component sensor kinase/response regulator hybrid.
  
 
 0.668
Atu3775
Conserved hypothetical protein.
 
 
0.664
Atu3061
GGDEF family protein.
   
 
 0.602
Atu4101
Hypothetical protein.
       0.592
exoH
Succinoglycan biosynthesis protein.
  
     0.587
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.