Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
dppA-2ABC transporter, substrate binding protein (dipeptide). (534 aa)    
Predicted Functional Partners:
dppB-3
ABC transporter, membrane spanning protein (dipeptide).
 
  0.992
dppC-3
ABC transporter, membrane spanning protein (dipeptide).
 
  0.992
dppF-2
ABC transporter, nucleotide binding/ATPase protein (dipeptide); Belongs to the ABC transporter superfamily.
 
  0.983
dppD-3
ABC transporter, nucleotide binding/ATPase protein (dipeptide); Belongs to the ABC transporter superfamily.
 
  0.978
Atu4432
ABC transporter, membrane spanning protein (oligopeptide).
  
   0.630
Atu0391
ABC transporter, nucleotide binding/ATPase protein; Belongs to the ABC transporter superfamily.
     
 0.628
malE
ABC transporter, substrate binding protein (maltose).
     
 0.628
ugpC-2
ABC transporter, nucleotide binding/ATPase protein (sn-Glycerol-3-phosphate); Part of the ABC transporter complex UgpABCE involved in sn- glycerol-3-phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. sn-glycerol-3- phosphate importer (TC 3.A.1.1.3) family.
     
 0.628
ugpC-3
ABC transporter, nucleotide binding/ATPase protein (glycerol-3-phosphate); Part of the ABC transporter complex UgpABCE involved in sn- glycerol-3-phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. sn-glycerol-3- phosphate importer (TC 3.A.1.1.3) family.
     
 0.628
Atu4450
ABC transporter, nucleotide binding/ATPase protein (sugar); Belongs to the ABC transporter superfamily.
     
 0.628
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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