Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
dppF-2ABC transporter, nucleotide binding/ATPase protein (dipeptide); Belongs to the ABC transporter superfamily. (281 aa)    
Predicted Functional Partners:
dppB-3
ABC transporter, membrane spanning protein (dipeptide).
 
  0.996
dppC-3
ABC transporter, membrane spanning protein (dipeptide).
  0.996
dppD-3
ABC transporter, nucleotide binding/ATPase protein (dipeptide); Belongs to the ABC transporter superfamily.
 
 
 
0.987
dppA-2
ABC transporter, substrate binding protein (dipeptide).
 
  0.983
Atu4433
ABC transporter, membrane spanning protein (oligopeptide).
 
   0.738
Atu3458
ABC transporter, membrane spanning protein.
 
   0.721
dppC-5
ABC transporter, membrane spanning protein (dipeptide).
 
   0.718
dppC-4
ABC transporter, membrane spanning protein (dipeptide).
 
   0.710
Atu3214
ABC transporter, membrane spanning protein (oligopeptide).
 
   0.697
dppC-2
ABC transporter, membrane spanning protein (dipeptide).
 
   0.688
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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