STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu4118Transcriptional regulator, GntR family. (224 aa)    
Predicted Functional Partners:
Atu3532
Transcriptional regulator, GntR family.
  
     0.773
Atu3961
Transcriptional regulator, GntR family.
  
     0.768
Atu4702
Transcriptional regulator, GntR family.
  
     0.761
Atu3908
Transcriptional regulator, GntR family.
  
     0.759
Atu4674
Transcriptional regulator, GntR family.
  
     0.755
Atu3794
Transcriptional regulator, FadR/GntR family.
  
    0.749
Atu3294
Transcriptional regulator, GntR family.
  
     0.735
Atu2821
Transcriptional regulator, GntR family.
  
    0.712
Atu0271
Transcriptional regulator, GntR family.
  
    0.707
exuR
Transcriptional regulator, GntR family.
  
    0.690
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.