STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Atu4122Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (305 aa)    
Predicted Functional Partners:
Atu3889
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.648
Atu3355
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.631
gstR
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.628
Atu4872
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.622
Atu3381
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.594
Atu4021
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.579
Atu0261
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.574
oxyR
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.542
Atu4004
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.522
Atu4121
Monooxygenase.
       0.522
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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