STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu4127ABC transporter, membrane spanning protein (branched chain amino acid); Belongs to the binding-protein-dependent transport system permease family. (335 aa)    
Predicted Functional Partners:
Atu4126
ABC transporter, membrane spanning protein (branched chain amino acid); Belongs to the binding-protein-dependent transport system permease family.
 
 0.999
Atu4123
ABC transporter, substrate binding protein (branched chain amino acid).
 
 
 0.998
Atu4124
ABC transporter, nucleotide binding/ATPase protein (branched chain amino acid).
 
 0.998
Atu4125
ABC transporter, nucleotide binding/ATPase protein (branched chain amino acid).
 
 0.998
Atu1410
ABC transporter, nucleotide binding/ATPase protein.
 
 0.985
livH-2
ABC transporter, membrane spanning protein (branched chain amino acid); Belongs to the binding-protein-dependent transport system permease family.
  
 0.982
livG
ABC transporter, nucleotide binding/ATPase protein (branched chain amino acid).
 
 0.981
Atu2425
ABC transporter, nucleotide binding/ATPase protein.
 
 0.978
Atu2424
ABC transporter, nucleotide binding/ATPase protein.
 
 0.974
livF
ABC transporter, nucleotide binding/ATPase protein (branched chain amino acid).
 
 0.971
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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