STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu4131Hydroxybutyrate dehydrogenase. (261 aa)    
Predicted Functional Partners:
acsA
acetoacetyl-CoA synthetase.
    
 0.981
hmgL
hydroxymethylglutaryl-CoA lyase.
   
 
 0.915
bdhA
D-beta-hydroxybutyrate dehydrogenase.
  
  
 
0.905
mmsB-2
3-hydroxyisobutyrate dehydrogenase; Belongs to the HIBADH-related family.
     
 0.862
Atu4128
GMC type oxidoreductase.
       0.741
Atu4127
ABC transporter, membrane spanning protein (branched chain amino acid); Belongs to the binding-protein-dependent transport system permease family.
       0.549
Atu4124
ABC transporter, nucleotide binding/ATPase protein (branched chain amino acid).
       0.541
Atu4125
ABC transporter, nucleotide binding/ATPase protein (branched chain amino acid).
       0.541
Atu4126
ABC transporter, membrane spanning protein (branched chain amino acid); Belongs to the binding-protein-dependent transport system permease family.
       0.541
Atu4132
Transcriptional regulator, AraC family.
       0.504
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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