STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu4146Conserved hypothetical protein. (625 aa)    
Predicted Functional Partners:
Atu4145
Conserved hypothetical protein.
     0.988
gshB-2
Glutathione synthetase; Belongs to the prokaryotic GSH synthase family.
 
    0.965
Atu0597
Conserved hypothetical protein.
  
     0.631
Atu4144
Hypothetical protein.
       0.608
Atu3546
Hypothetical protein.
  
     0.607
Atu3432
Desulfurizing enzyme.
  
     0.603
Atu2240
Hypothetical protein.
  
     0.548
Atu0480
Polysaccharide biosynthesis protein.
  
     0.546
exoQ
Exopolysaccharide production protein.
  
     0.544
Atu3549
Conserved hypothetical protein.
  
     0.541
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.