STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gcvATranscriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (300 aa)    
Predicted Functional Partners:
Atu3355
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.703
Atu4437
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.676
Atu2191
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.675
Atu3889
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.649
Atu3381
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.642
gbpR
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.617
Atu4004
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.596
Atu3829
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.582
Atu4153
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
     0.557
smpB
SSRA-binding protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...]
     
 0.529
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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