STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu4190Calcium-binding protein, regucalcin. (293 aa)    
Predicted Functional Partners:
ilvD-2
Dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family.
 
  
 0.914
dapA-5
Dihydropicolinate synthase; Belongs to the DapA family.
     
 0.817
Atu4191
Transcriptional regulator, GntR family.
     
 0.815
Atu4196
Conserved hypothetical protein; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
   
 0.700
Atu4197
Conserved hypothetical protein.
 
   
 0.647
Atu4192
ABC transporter, substrate binding protein (oligopeptide).
     
 0.637
Atu4193
ABC transporter, membrane spanning protein (oligopeptide).
     
 0.587
Atu4194
ABC transporter, membrane spanning protein (oligopeptide).
     
 0.585
Atu4195
ABC transporter, nucleotide binding/ATPase protein (oligopeptide); Belongs to the ABC transporter superfamily.
     
 0.575
Atu1654
Nitroreductase.
   
  
 0.473
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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