STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Atu4190Calcium-binding protein, regucalcin. (293 aa)    
Predicted Functional Partners:
Atu4191
Transcriptional regulator, GntR family.
     
 0.851
dapA-5
Dihydropicolinate synthase; Belongs to the DapA family.
     
 0.819
Atu4196
Conserved hypothetical protein; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
   
 0.704
Atu4197
Conserved hypothetical protein.
 
  
 0.665
Atu4192
ABC transporter, substrate binding protein (oligopeptide).
     
 0.645
gci
Conserved hypothetical protein; Catalyzes the ring opening of D-galactaro-1,4-lactone to yield 5-keto-4-deoxy-D-glucarate (KDG) via a beta-elimination reaction. This is a step in the oxidative degradation pathway of D-galacturonate, which allows A.tumefaciens to utilize D-galacturonate as a sole carbon source. To a lesser extent, can also use D-glucaro-1,4-lactone as substrate to produce KDG, but cannot use D-galactaro-1,5-lactone, D- glucaro-6,3-lactone and linear D-glucarate.
 
   
 0.598
Atu4193
ABC transporter, membrane spanning protein (oligopeptide).
     
 0.590
Atu4194
ABC transporter, membrane spanning protein (oligopeptide).
     
 0.589
Atu4195
ABC transporter, nucleotide binding/ATPase protein (oligopeptide); Belongs to the ABC transporter superfamily.
     
 0.578
Atu1654
Nitroreductase.
   
  
 0.479
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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