Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
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[Homology]
Score
Atu4192ABC transporter, substrate binding protein (oligopeptide). (649 aa)    
Predicted Functional Partners:
Atu4193
ABC transporter, membrane spanning protein (oligopeptide).
 
 0.995
Atu4194
ABC transporter, membrane spanning protein (oligopeptide).
 
 0.995
Atu2588
ABC transporter, membrane spanning protein (oligopeptide).
  
   0.822
Atu2589
ABC transporter, membrane spanning protein (oligopeptide).
  
   0.812
Atu4195
ABC transporter, nucleotide binding/ATPase protein (oligopeptide); Belongs to the ABC transporter superfamily.
  
 
 0.756
Atu4196
Conserved hypothetical protein; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
   
 0.730
Atu4191
Transcriptional regulator, GntR family.
     
 0.685
Atu4663
ABC transporter, membrane spanning protein (oligopeptide).
  
   0.674
dapA-5
Dihydropicolinate synthase; Belongs to the DapA family.
 
   
 0.673
Atu4197
Conserved hypothetical protein.
     
 0.656
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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