STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tetRTranscriptional regulator, TetR family. (215 aa)    
Predicted Functional Partners:
tetA
Tetracycline resistance protein.
 
   
 0.821
Atu3015
Conserved hypothetical protein.
  
     0.530
pecS
Transcriptional regulator, MarR family.
  
   
 0.521
hutC
Transcriptional regulator, GntR family.
   
  
 0.508
hutC-2
Transcriptional regulator, GntR family.
   
  
 0.508
Atu4217
Transcriptional regulator, TetR family.
      
 0.463
emrA
Multidrug resistance efflux pump.
      
 0.459
acrR
Transcriptional regulator, TetR family.
      
 0.458
luxR
Transcriptional regulator, LuxR family.
      
 0.454
Atu4218
Multidrug efflux protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
      
 0.453
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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